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GPM
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The Global Proteome Machine, Advanced Search Page
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  1. 1. spectra
    DTA, PKL or Matrix Science format only
      

    taxon
    Select one or more.
    Eukaryotes:
    		 Prokaryotes:
    1. reversed sequences
    2. all 15N
    		with log(e) <
    gpmdb
    1. Add to gpmDB: yes no | MS/MS archive yes no
    2. Anonymous contribution: yes no
      3. name:
      institution:
      email:
      project:
      description:
      organelle:
      (GO)  
      cell type:
      (CELL)  
      cell culture:
      (BRENDA)  
      tissue type:
      (BRENDA)  
  2. 2. measurement errors
    1. Fragment mass error:  
    2. Parent mass error: + -
    3. Isotope error: yes no
    4. Fragment type: monoisotopic average
  3. 3. signal processing
    1. Remove redundant: yes no, angle: (0-90)
    2. Maximum parent charge:
    3. Spectrum synthesis: yes no
    4. Noise suppression: yes no
    5. Minimum parent M+H:
    6. Minimum fragment m/z:
    7. Total peaks:
    8. Minimum peaks:
    9. Fragment types: a b c x y z
  4. 4. protein modifications
    1. Complete modifications:

      specify your own
    2. Potential modifications:
      specify your own
    3. Potential motif:
    4. Protein N-terminus:  Da
    5. Protein C-terminus:  Da
  5. 5. refinement specification
    1. Refine model: yes no
    2. Point mutations: yes no
    3. Semi-style cleavage: yes no
    4. Potential modifications (unimod):
      round 1 round 2

       mods:
      motifs:
       mods: motifs:
      round 3 round 4

       mods:
      motifs:
       mods: motifs:
    5. Use these modifications throughout: yes no
    6. Unantipated cleaves ([X]|[X]): yes no
    7. Potential N-terminus modifications:
    8. Potential C-terminus modifications:
    9. Valid expectation: <
  6. 6. protein cleavage specification
    1. Cleavage site:

      specify your own
    2. Semi-style cleavage: yes no
    3. Missed cleavage sites allowed:
    4. Cleavage C-terminal change:  Da
    5. Cleavage N-terminal change:  Da