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GPM Cyclone XE, Simple search page


  1. Use X! Tandem P3 Hunter
  2. spectra
    ASCII formats only
  3. taxon
    Select one or more.
    Eukaryotes Prokaryotes Viruses
        1. Reversed sequences: | no | yes | only |
        2. Use masses for amino acids with all 15N: yes
        3. Check parent ions for charges 1, 2 & 3 yes
         with peptide log(e) < and protein log(e) <
  4.   sample information
    name:
         additional sample information ...
  5.   measurement errors
    1. Fragment mass error:  
  6.   residue modifications
    1. Complete modifications (unimod)
      Set 1

      specify your own
      Set 2

      more sets ...
    2. Potential modifications:
      specify your own
    3. Use sequence annotations yes no
    4. Protein N-terminal acetylation: yes no
  7.   refinement specification
    1. Potential modifications (unimod):
      round 1 round 2

       mods:
      motifs:

       mods:
      motifs:
    2. Semi-cleavage: yes no
    3. Use sequence annotations yes no
    4. Point mutations: yes no
    5. Single amino acid polymorphisms: yes no
    6. Valid expectation: <
  8.   protein cleavage specification
    1. Cleavage site:
    2. Semi-cleavage: yes no
  9.   spectrum conditioning
    1. Remove redundant: yes no, angle: (0-90)
    2. Spectrum synthesis: yes no
  10.   predefined methods
    1. Method: Select device & parent δm.